Page Comparison

...

Type

File Extension(s)

Mime-Type

Supported by IKOSA Portal

Supported use (applications and training)

(IKOSA Prisma docs, IKOSA AI docs)

Aperio/Leica SVS (TIFF)

svs, tif

image/x.aperio.svs+tiff

Status

colour	Purple
title	2D - WSI - 8-bit

Applications:

Axon Quantification (>=1.0.0)

CAM Assay (>=2.0.0)

Confluence Assay (>=1.0.0)

Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0)

Ki-67 Breast Quantification (>=1.0.0)

Network Formation Assay (>=2.0.0)

Neuronal Network Morphology (>=1.0.0) (not a publicly available app)

Spheroid Sprouting Assay (2.0.0, 2.1.0)

Wound Healing (Scratch) Assay (>=1.0.0)

Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app)

CD31 IHC Vessel Quantification (>=1.0.0)

IKOSA AI (deployed apps):

IKOSA AI Semantic Segmentation (>=4.2.0)

IKOSA AI Instance Segmentation 2D (>=1.0.0)

IKOSA AI (application training):

IKOSA AI Semantic Segmentation

IKOSA AI Instance Segmentation 2D

Hamamatsu NDPI

ndpi

image/x.hamamatsu.ndpi+tiff

Status

colour	Purple
title	2D - WSI - 8-bit

Applications:

Axon Quantification (>=1.0.0)

CAM Assay (>=2.0.0)

Confluence Assay (>=1.0.0)

Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0)

Ki-67 Breast Quantification (>=1.0.0)

Network Formation Assay (>=2.0.0)

Neuronal Network Morphology (>=1.0.0) (not a publicly available app)

Spheroid Sprouting Assay (2.0.0, 2.1.0)

Wound Healing (Scratch) Assay (>=1.0.0)

Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app)

CD31 IHC Vessel Quantification (>=1.0.0)

IKOSA AI (deployed apps):

IKOSA AI Semantic Segmentation (>=4.2.0)

IKOSA AI Instance Segmentation 2D (>=1.0.0)

IKOSA AI (application training):

IKOSA AI Semantic Segmentation

IKOSA AI Instance Segmentation 2D

Zeiss CZI

czi

image/x.zeiss.czi

Status

colour	Purple
title	2D - WSI - 8-bit

Status

colour	Purple
title	2D - WSI - 16-bit

Status

colour	Purple
title	Multichannel - WSI - 8-bit

Status

colour	Purple
title	Multichannel - WSI - 16-bit

Status

colour	Purple
title	TIME SERIES - WSI - 8-bit

Status

colour	Purple
title	TIME SERIES - WSI - 16-bit

Applications:

Axon Quantification (>=2.1.0 -

Status

colour	Purple
title	2D - WSI (8-bit)

only!)

CAM Assay (>=3.1.0 -

Status

colour	Purple
title	WSI (8-bit)

only!)

Cell Painting (>= 1.0.0 -

Status

colour	Purple
title	Multichannel - WSI (8/16-bit)

only!)

Confluence Assay (>=1.0.0 -

Status

colour	Purple
title	WSI (8-bit)

only!; >=2.0.0)

Cytosolic & Nuclear Translocation Assay (>=3.1.0 -

Status

colour	Purple
title	2D/TIME SERIES - WSI

only!)

Ki-67 Breast Quantification (>=3.1.0 -

Status

colour	Purple
title	2D - WSI (8-bit)

only!)

Network Formation Assay (>=2.1.0 -

Status

colour	Purple
title	WSI (8-bit)

only!)

Neuronal Network Morphology (>=1.0.0 -

Status

colour	Purple
title	WSI (8-bit)

only!) (not a publicly available app)

Sparkfinder (>= 1.0.0 -

Status

colour	Purple
title	Multichannel - WSI (8/16-bit)

only!)

Spheroid Lipid Droplet Profiling (>= 1.0.0 -

Status

colour	Purple
title	Multichannel - WSI (8/16-bit)

only!) (not a publicly available app)

Spheroid Sprouting Assay (>=2.1.0 -

Status

colour	Purple
title	WSI (8-bit)

only!)

Wound Healing (Scratch) Assay (>=2.1.0 -

Status

colour	Purple
title	WSI (8-bit)

only!, >= 3.0.0)

Ovarian Carcinoma DAB Scoring (>=1.0.0

Status

colour	Purple
title	2D - TIME SERIES - WSI (8-bit)

only!) (not a publicly available app)

CD31 IHC Vessel Quantification (>=1.0.0

IKOSA AI (deployed apps):

IKOSA AI Semantic Segmentation (>=4.2.0 -

Status

colour	Purple
title	WSI (8-bit)

only!)

IKOSA AI Instance Segmentation 2D (>=1.0.0 -

Status

colour	Purple
title	WSI (8/16-bit)

- only!)

IKOSA AI Instance Segmentation Multichannel (>= 1.0.0 -

Status

colour	Purple
title	Multichannel - WSI (8/16-bit)

only!)

IKOSA AI (algorithm training):

IKOSA AI Semantic Segmentation (

Status

colour	Purple
title	2D - WSI (8-bit)

only!)

IKOSA AI Instance Segmentation 2D (

Status

colour	Purple
title	2D - WSI (8/16-bit)

only!)

IKOSA AI Instance Segmentation Multichannel (

Status

colour	Purple
title	Multichannel - WSI (8/16-biT)

only!)

PreciPoint VMIC

vmic

image/x.precipoint.vmic

Status

colour	Purple
title	2D - WSI - 8-bit

Applications:

Axon Quantification (>=1.0.0)

CAM Assay (>=2.0.0)

Confluence Assay (>=1.0.0)

Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0)

Ki-67 Breast Quantification (>=1.0.0)

Network Formation Assay (>=2.0.0)

Neuronal Network Morphology (>=1.0.0) (not a publicly available app)

Spheroid Sprouting Assay (2.0.0, 2.1.0)

Wound Healing (Scratch) Assay (>=1.0.0)

Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app)

CD31 IHC Vessel Quantification (>=1.0.0)

IKOSA AI (deployed apps):

IKOSA AI Semantic Segmentation (>=4.2.0)

IKOSA AI Instance Segmentation 2D (>=1.0.0)

IKOSA AI (application training):

IKOSA AI Semantic Segmentation

IKOSA AI Instance Segmentation 2D

PreciPoint GTIF

gtif

image/x.precipoint.gtif

Status

colour	Purple
title	2D - WSI - 8-bit

Applications:

Axon Quantification (>=1.0.0)

CAM Assay (>=2.0.0)

Confluence Assay (>=1.0.0)

Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0)

Ki-67 Breast Quantification (>=1.0.0)

Network Formation Assay (>=2.0.0)

Neuronal Network Morphology (>=1.0.0) (not a publicly available app)

Spheroid Sprouting Assay (2.0.0, 2.1.0)

Wound Healing (Scratch) Assay (>=1.0.0)

Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app)

CD31 IHC Vessel Quantification (>=1.0.0)

IKOSA AI (deployed apps):

IKOSA AI Semantic Segmentation (>=4.2.0)

IKOSA AI Instance Segmentation 2D (>=1.0.0)

IKOSA AI (application training):

IKOSA AI Semantic Segmentation

IKOSA AI Instance Segmentation 2D

Generic Tiled TIFF

tif, tiff

image/x.tiled.tiff+pyramid

Status

colour	Purple
title	2D - WSI - 8-bit

Applications:

Axon Quantification (>=1.0.0)

CAM Assay (>=2.0.0)

Confluence Assay (>=1.0.0)

Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0)

Ki-67 Breast Quantification (>=1.0.0)

Network Formation Assay (>=2.0.0)

Neuronal Network Morphology (>=1.0.0) (not a publicly available app)

Spheroid Sprouting Assay (2.0.0, 2.1.0)

Wound Healing (Scratch) Assay (>=1.0.0)

Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app)

CD31 IHC Vessel Quantification (>=1.0.0)

IKOSA AI (deployed apps):

IKOSA AI Semantic Segmentation (>=4.2.0)

IKOSA AI Instance Segmentation 2D (>=1.0.0)

IKOSA AI (application training):

IKOSA AI Semantic Segmentation

IKOSA AI Instance Segmentation 2D

Huron Digital Pathology TIFF

tif, tiff

image/x.huron.tiff+pyramid

Status

colour	Purple
title	2D - WSI - 8-bit

Note
Important: except JPEG2000 compression

Applications:

Axon Quantification (>=1.0.0)

CAM Assay (>=2.0.0)

Confluence Assay (>=1.0.0)

Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0)

Ki-67 Breast Quantification (>=1.0.0)

Network Formation Assay (>=2.0.0)

Neuronal Network Morphology (>=1.0.0) (not a publicly available app)

Spheroid Sprouting Assay (2.0.0, 2.1.0)

Wound Healing (Scratch) Assay (>=1.0.0)

Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app)

CD31 IHC Vessel Quantification (>=1.0.0)

IKOSA AI (deployed apps):

IKOSA AI Semantic Segmentation (>=4.2.0)

IKOSA AI Instance Segmentation 2D (>=1.0.0)

IKOSA AI (application training):

IKOSA AI Semantic Segmentation

IKOSA AI Instance Segmentation 2D

Philips Healthcare TIFF

tif, tiff

image/x.philips.tiff+pyramid

Status

colour	Purple
title	2D - WSI - 8-bit

Applications:

Axon Quantification (>=1.0.0)

CAM Assay (>=2.0.0)

Confluence Assay (>=1.0.0)

Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0)

Ki-67 Breast Quantification (>=1.0.0)

Network Formation Assay (>=2.0.0)

Neuronal Network Morphology (>=1.0.0) (not a publicly available app)

Spheroid Sprouting Assay (2.0.0, 2.1.0)

Wound Healing (Scratch) Assay (>=1.0.0)

Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app)

CD31 IHC Vessel Quantification (>=1.0.0)

IKOSA AI (deployed apps):

IKOSA AI Semantic Segmentation (>=4.2.0)

IKOSA AI Instance Segmentation 2D (>=1.0.0)

IKOSA AI (application training):

IKOSA AI Semantic Segmentation

IKOSA AI Instance Segmentation 2D

Roche / Ventana TIFF

tif, tiff

Note
Important: bif, vtif are NOT supported

image/x.ventana.tiff+pyramid

Status

colour	Purple
title	2D - WSI - 8-bit

Applications:

Axon Quantification (>=1.0.0)

CAM Assay (>=2.0.0)

Confluence Assay (>=1.0.0)

Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0)

Ki-67 Breast Quantification (>=1.0.0)

Network Formation Assay (>=2.0.0)

Neuronal Network Morphology (>=1.0.0) (not a publicly available app)

Spheroid Sprouting Assay (2.0.0, 2.1.0)

Wound Healing (Scratch) Assay (>=1.0.0)

Ovarian Carcinoma DAB Scoring (>=1.0.0.0) (not a publicly available app)

CD31 IHC Vessel Quantification (>=1.0.0)

IKOSA AI (deployed apps):

IKOSA AI Semantic Segmentation (>=4.2.0)

IKOSA AI Instance Segmentation 2D (>=1.0.0)

IKOSA AI (application training):

IKOSA AI Semantic Segmentation

IKOSA AI Instance Segmentation 2D

Leica SCN

(Brightfield)

scn

image/x.leica.scn.tiff+pyramid

Status

colour	Purple
title	2D - WSI - 8-bit

Applications:

Axon Quantification (>=1.0.0)

CAM Assay (>=2.0.0)

Confluence Assay (>=1.0.0)

Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0)

Ki-67 Breast Quantification (>=1.0.0)

Network Formation Assay (>=2.0.0)

Neuronal Network Morphology (>=1.0.0) (not a publicly available app)

Spheroid Sprouting Assay (2.0.0, 2.1.0)

Wound Healing (Scratch) Assay (>=1.0.0)

Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app)

CD31 IHC Vessel Quantification (>=1.0.0)

IKOSA AI (deployed apps):

IKOSA AI Semantic Segmentation (>=4.2.0)

IKOSA AI Instance Segmentation 2D (>=1.0.0)

IKOSA AI (application training):

IKOSA AI Semantic Segmentation

IKOSA AI Instance Segmentation 2D

PerkinElmer QPTIFF

qptiff

image/x.perkinelmer.qptiff+pyramid

Status

colour	Purple
title	2D - WSI - 8-bit

Status

colour	Purple
title	Multichannel - WSI - 8-bit

Status

colour	Purple
title	Multichannel - WSI - 16-bit

Applications:

Axon Quantification (>=1.0.0 -

Status

colour	Purple
title	2D - WSI (8-bit)

only!)

CAM Assay (>=2.0.0 -

Status

colour	Purple
title	2D - WSI (8-bit)

only!; >=3.2.0 -

Status

colour	Purple
title	WSI (8-bit)

only!)

Cell Painting (>= 1.0.0 -

Status

colour	Purple
title	Multichannel - WSI (8/16-bit)

only!)

Confluence Assay (1.0.0 -

Status

colour	Purple
title	2D - WSI (8-bit)

only! >=1.1.0 -

Status

colour	Purple
title	WSI (8-bit)

only!; >=2.0.0)

Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0 -

Status

colour	Purple
title	2D - WSI (8-bit)

only!)

Ki-67 Breast Quantification (>=1.0.0 -

Status

colour	Purple
title	2D - WSI (8-bit)

only!)

Network Formation Assay (>=2.0.0 -

Status

colour	Purple
title	2D - WSI (8-bit)

only!; >=2.2.0 -

Status

colour	Purple
title	WSI (8-bit)

only!)

Neuronal Network Morphology (>=1.0.0 -

Status

colour	Purple
title	WSI (8-bit)

only!) (not a publicly available app)

Sparkfinder (>= 1.2.0 -

Status

colour	Purple
title	Multichannel - WSI (8/16-bit)

only!)

Spheroid Lipid Droplet Profiling (>= 1.0.0 -

Status

colour	Purple
title	Multichannel - WSI (8/16-bit)

only!) (not a publicly available app)

Spheroid Sprouting Assay (2.0.0, 2.1.0 -

Status

colour	Purple
title	2D - WSI (8-bit)

only!; >=2.2.0 -

Status

colour	Purple
title	WSI (8-bit)

only!)

Wound Healing (Scratch) Assay (>=1.0.0 -

Status

colour	Purple
title	2D - WSI (8-bit)

only!; >=2.2.0 -

Status

colour	Purple
title	WSI (8-bit)

only!; >=3.0.0)

Ovarian Carcinoma DAB Scoring (>=1.0.0

Status

colour	Purple
title	2D/TIME SERIES - WSI (8-bit)

only!) (not a publicly available app)

CD31 IHC Vessel Quantification (>=1.0.0

Status

colour	Purple
title	2D/TIME SERIES - WSI (8-bit)

only!)

IKOSA AI (deployed apps):

IKOSA AI Semantic Segmentation (>=4.2.0 -

Status

colour	Purple
title	2D - WSI (8-bit)

only!; >=5.1.0)

IKOSA AI Instance Segmentation 2D (>=1.0.0 -

Status

colour	Purple
title	2D - WSI (8-bit)

only!; >=2.1.0)

IKOSA AI Instance Segmentation Multichannel (>= 2.1.0 -

Status

colour	Purple
title	Multichannel - WSI (8/16-bit)

only!)

IKOSA AI (application training):

IKOSA AI Semantic Segmentation (

Status

colour	Purple
title	2D - WSI (8-bit)

only!)

IKOSA AI Instance Segmentation 2D (

Status

colour	Purple
title	2D - WSI (8-bit)

only!)

KOSA AI Instance Segmentation Multichannel (

Status

colour	Purple
title	Multichannel - WSI (8/16-bit)

only!)

JPEG file (JFIF encoded)

jpg, jpeg

image/jpeg

Status

colour	Blue
title	2D - 8-bit

Applications:

Axon Quantification (>=1.0.1)

CAM Assay (>=1.0.0)

CAM Grid Assay (1.0.0, 1.1.0)

Confluence Assay (>=1.0.0)

Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0)

Fibrin Tube Formation Assay (1.0.0, 1.0.2)

Fungi Repaint Assay (1.0.0, 2.0.0)

Ki-67 Breast Quantification (>=1.0.0)

Network Formation Assay (>=1.0.0)

Neuronal Network Morphology (>=1.0.0) (not a publicly available app)

Spheroid Sprouting Assay (1.0.0, 2.0.0, 2.1.0)

TEM Myocardium Assay (1.0.0)

Wound Healing (Scratch) Assay (>=1.0.0)

Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app)

CD31 IHC Vessel Quantification (>=1.0.0)

IKOSA AI (deployed apps):

IKOSA AI Semantic Segmentation (>=4.2.0)

IKOSA AI Instance Segmentation 2D (>=1.0.0)

IKOSA AI (application training):

IKOSA AI Semantic Segmentation

IKOSA AI Instance Segmentation 2D

PNG

png

image/png

Status

colour	Blue
title	2D - 8-bit

Applications:

Axon Quantification (>=1.0.1)

CAM Assay (>=1.0.0)

CAM Grid Assay (1.0.0, 1.1.0)

Confluence Assay (>=1.0.0)

Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0)

Fibrin Tube Formation Assay (1.0.0, 1.0.2)

Fungi Repaint Assay (1.0.0, 2.0.0)

Ki-67 Breast Quantification (>=1.0.0)

Network Formation Assay (>=1.0.0)

Neuronal Network Morphology (>=1.0.0) (not a publicly available app)

Spheroid Sprouting Assay (1.0.0, 2.0.0, 2.1.0)

TEM Myocardium Assay (1.0.0)

Wound Healing (Scratch) Assay (>=1.0.0)

Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app)

CD31 IHC Vessel Quantification (>=1.0.0)

IKOSA AI (deployed apps):

IKOSA AI Semantic Segmentation (>=4.2.0)

IKOSA AI Instance Segmentation 2D (>=1.0.0)

IKOSA AI (application training):

IKOSA AI Semantic Segmentation

IKOSA AI Instance Segmentation 2D

BMP

bmp

image/bmp

Status

colour	Blue
title	2D - 8-bit

Applications:

Axon Quantification (>=1.0.1)

CAM Assay (>=1.0.0)

CAM Grid Assay (1.0.0, 1.1.0)

Confluence Assay (>=1.0.0)

Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0)

Fibrin Tube Formation Assay (1.0.0, 1.0.2)

Fungi Repaint Assay (1.0.0, 2.0.0)

Ki-67 Breast Quantification (>=1.0.0)

Network Formation Assay (>=1.0.0)

Neuronal Network Morphology (>=1.0.0) (not a publicly available app)

Spheroid Sprouting Assay (1.0.0, 2.0.0, 2.1.0)

TEM Myocardium Assay (1.0.0)

Wound Healing (Scratch) Assay (>=1.0.0)

Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app)

CD31 IHC Vessel Quantification (>=1.0.0)

IKOSA AI (deployed apps):

IKOSA AI Semantic Segmentation (>=4.2.0)

IKOSA AI Instance Segmentation 2D (>=1.0.0)

IKOSA AI (application training):

IKOSA AI Semantic Segmentation

IKOSA AI Instance Segmentation 2D

TIFF

tif, tiff

image/tiff

Status

colour	Blue
title	2D - 8-bit

Status

colour	Blue
title	2D - 16-bit

Note
Important: except JPEG2000 compression or signed integer data

Applications:

Axon Quantification (>=1.0.1 -

Status

colour	Blue
title	2D (8-bit)

only!)

CAM Assay (>=1.0.0 -

Status

colour	Blue
title	2D (8-bit)

only!)

CAM Grid Assay (1.0.0 and 1.1.0 -

Status

colour	Blue
title	2D (8-bit)

only!)

Confluence Assay (>=1.0.0 -

Status

colour	Blue
title	2D (8-bit)

only!; >=2.0.0)

Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0)

Fibrin Tube Formation Assay (1.0.0, 1.0.2 -

Status

colour	Blue
title	2D (8-bit)

only!)

Fungi Repaint Assay (1.0.0, 2.0.0 -

Status

colour	Blue
title	2D (8-bit)

only!)

Ki-67 Breast Quantification (>=1.0.0 -

Status

colour	Blue
title	2D (8-bit)

only!)

Network Formation Assay (>=1.0.0 -

Status

colour	Blue
title	2D (8-bit)

only!)

Neuronal Network Morphology (>=1.0.0 -

Status

colour	Blue
title	2D (8-bit)

only!) (not a publicly available app)

Spheroid Sprouting Assay (1.0.0, 2.0.0, 2.1.0 -

Status

colour	Blue
title	2D (8-bit)

only!)

TEM Myocardium Assay (1.0.0)

Wound Healing (Scratch) Assay (>=1.0.0 -

Status

colour	Blue
title	2D (8-bit)

only!; >=3.0.0)

Ovarian Carcinoma DAB Scoring (>=1.0.0 -

Status

colour	Blue
title	2D (8-bit)

only!

)

only!) (not a publicly available app)

CD31 IHC Vessel Quantification (>=1.0.0 -

Status

colour	Blue
title	2D (8-bit)

only!)

IKOSA AI (deployed apps):

IKOSA AI Semantic Segmentation (4.2.0, 4.3.0, 4.4.0 -

Status

colour	Blue
title	2D (8-bit)

only!, >= 4.5.0)

IKOSA AI Instance Segmentation 2D (>=1.0.0)

IKOSA AI (algorithm training):

IKOSA AI Semantic Segmentation (

Status

colour	Blue
title	2D (8-bit)

only!)

IKOSA AI Instance Segmentation 2D

Multipage TIFF

tif, tiff

image/tiff

Status

colour	Blue
title	MULTICHANNEL - 8-bit

Status

colour	Blue
title	MULTICHANNEL - 16-bit

Status

colour	Blue
title	TIME SERIES - 8-bit

Status

colour	Blue
title	TIME SERIES - 16-bit

Note
Important: except JPEG2000 compression or signed integer data

Applications:

CAM Assay (>=2.0.0 -

Status

colour	Blue
title	8-bit

only!)

Cell Painting (>=1.0.0 -

Status

colour	Blue
title	Multichannel (8/16-bit)

only!)

Confluence Assay (>=1.0.0 -

Status

colour	Blue
title	8-bit

only!; >=2.0.0)

Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0 -

Status

colour	Blue
title	TIME SERIES (8/16-bit)

only!)

Network Formation Assay (>=2.0.0

Status

colour	Blue
title	TIME SERIES - 8-bit

only!)

Neuronal Network Morphology (>=1.0.0 -

Status

colour	Blue
title	8-bit

only!) (not a publicly available app)

Sparkfinder (>=1.0.0 -

Status

colour	Blue
title	Multichannel (8/16-bit)

only!)

Spheroid Lipid Droplet Profiling (>=1.0.0 -

Status

colour	Blue
title	Multichannel (8/16-bit)

only!) (not a publicly available app)

Spheroid Sprouting Assay (2.0.0, 2.1.0 -

Status

colour	Blue
title	TIME SERIES - 8-bit

only!)

Wound Healing (Scratch) Assay (>=1.0.0 -

Status

colour	Blue
title	8-bit

only!; >=3.0.0)

Ovarian Carcinoma DAB Scoring (>=1.0.0

Status

colour	Blue
title	8-bit 2D/TIME SERIES - WSI

only!) (not a publicly available app)

CD31 IHC Vessel Quantification (>=1.0.0

Status

colour	Blue
title	8-bit 2D/TIME SERIES - WSI

only!)

IKOSA AI (deployed apps):

IKOSA AI Semantic Segmentation (4.2.0, 4.3.0, 4.4.0 -

Status

colour	Blue
title	2D (8-bit)

only!, >= 4.5.0)

IKOSA AI Instance Segmentation 2D (>=1.0.0)

IKOSA AI Instance Segmentation Multichannel (>=1.0.0 -

Status

colour	Blue
title	Multichannel (8/16-bit)

only!)

IKOSA AI (algorithm training):

IKOSA AI Instance Segmentation Multichannel (

Status

colour	Blue
title	Multichannel (8/16-bit)

only!)

OME TIFF

ome.tif, ome.tiff,
.ome.tf2,
.ome.tf8,
.ome.btf

image/x.ome.tiff

Status

colour	Blue
title	2D - 8-bit

Status

colour	Blue
title	2D - 16-bit

Status

colour	Blue
title	MULTICHANNEL - 8-bit

Status

colour	Blue
title	MULTICHANNEL - 16-bit

Status

colour	Blue
title	TIME SERIES - 8-bit

Status

colour	Blue
title	TIME SERIES - 16-bit

Note
Important: except OME-TIFFs with external metadata

Applications:

Axon Quantification (>=2.1.0 -

Status

colour	Blue
title	2D (8-bit)

only!)

CAM Assay (>=3.1.0 -

Status

colour	Blue
title	8-bit

only!)

Cell Painting (>= 1.0.0 -

Status

colour	Blue
title	Multichannel (8/16-bit)

only!)

Confluence Assay (>=1.0.0 -

Status

colour	Blue
title	8-bit

only!; >=2.0.0)

Cytosolic & Nuclear Translocation Assay (>=3.1.0 -

Status

colour	Blue
title	2D/TIME SERIES

only!)

Ki-67 Breast Quantification (>=3.1.0 -

Status

colour	Blue
title	2D (8-bit)

only!)

Network Formation Assay (>=2.1.0 -

Status

colour	Blue
title	8-bit

only!)

Neuronal Network Morphology (>=1.0.0 -

Status

colour	Blue
title	8-bit

only!) (not a publicly available app)

Sparkfinder (>= 1.0.0 -

Status

colour	Blue
title	Multichannel (8/16-bit)

only!)

Spheroid Lipid Droplet Profiling (>=1.0.0 -

Status

colour	Blue
title	Multichannel (8/16-bit)

only!) (not a publicly available app)

Spheroid Sprouting Assay (>=2.1.0 -

Status

colour	Blue
title	8-bit

only!)

Wound Healing (Scratch) Assay (>=2.1.0 -

Status

colour	Blue
title	8-bit

only!; >=3.0.0)

Ovarian Carcinoma DAB Scoring (>=1.0.0

Status

colour	Blue
title	8-bit 2D/TIME SERIES - WSI

only!) (not a publicly available app)

CD31 IHC Vessel Quantification (>=1.0.0

Status

colour	Blue
title	8-bit 2D/TIME SERIES - WSI

only!)

IKOSA AI (deployed apps):

IKOSA AI Semantic Segmentation (>=4.2.0 -

Status

colour	Blue
title	8-bit

only!)

IKOSA AI Instance Segmentation 2D (>=1.0.0)

IKOSA AI Instance Segmentation Multichannel (>= 1.0.0)

IKOSA AI (algorithm training):

IKOSA AI Semantic Segmentation (

Status

colour	Blue
title	2D (8-bit)

only!)

IKOSA AI Instance Segmentation 2D (

Status

colour	Blue
title	2D (8/16-bit)

only!)

IKOSA AI Instance Segmentation Multichannel (

Status

colour	Blue
title	Multichannel (8/16-bit)

only!)

Molecular Devices Stack STK

stk

Status

colour	Blue
title	2D - 8-bit

Status

colour	Blue
title	2D - 16-bit

Status

colour	Blue
title	Multichannel - 8-bit

Status

colour	Blue
title	Multichannel - 16-bit

Status

colour	Blue
title	TIME SERIES 8-bit

Status

colour	Blue
title	TIME SERIES 16-bit

Applications:

Axon Quantification (>=1.0.1 -

Status

colour	Blue
title	2D (8-bit)

only!)

CAM Assay (1.0.0 -

Status

colour	Blue
title	2D (8-bit)

only, >=2.0.0 -

Status

colour	Blue
title	8-bit

only!)

CAM Grid Assay (1.0.0 and 1.1.0 -

Status

colour	Blue
title	2D (8-bit)

only!)

Cell Painting (>=1.0.0 -

Status

colour	Blue
title	Multichannel (8/16-bit)

only!)

Confluence Assay (>=1.0.0 -

Status

colour	Blue
title	8-bit

only!; >=2.0.0)

Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0 -

Status

colour	Blue
title	2D - TIME SERIES - 8/16-bit

only!)

Fibrin Tube Formation Assay (1.0.0, 1.0.2 -

Status

colour	Blue
title	2D (8-bit)

only!)

Fungi Repaint Assay (1.0.0 and 2.0.0 -

Status

colour	Blue
title	2D (8-bit)

only!)

Ki-67 Breast Quantification (>=1.0.0 -

Status

colour	Blue
title	2D (8-bit)

only!)

Network Formation Assay (1.0.0 -

Status

colour	Blue
title	2D (8-bit)

only!, >=2.0.0 -

Status

colour	Blue
title	8-bit

only!)

Neuronal Network Morphology (>=1.0.0 -

Status

colour	Blue
title	8-bit

only) (not a publicly available app)

Sparkfinder (>=1.0.0 -

Status

colour	Blue
title	Multichannel (8/16-bit)

only!)

Spheroid Lipid Droplet Profiling (>=1.0.0 -

Status

colour	Blue
title	Multichannel (8/16-bit)

only!) (not a publicly available app)

Spheroid Sprouting Assay (1.0.0 -

Status

colour	Blue
title	2D (8-bit)

only, 2.0.0, 2.1.0)

TEM Myocardium Assay (1.0.0 -

Status

colour	Blue
title	2D (8/16-bit)

only!)

Wound Healing (Scratch) Assay (>=1.0.0 -

Status

colour	Blue
title	8-bit

only!; >=3.0.0)

Ovarian Carcinoma DAB Scoring (>=1.0.0

Status

colour	Blue
title	8-bit 2D/TIME SERIES - WSI

only!) (not a publicly available app)

CD31 IHC Vessel Quantification (>=1.0.0

Status

colour	Blue
title	8-bit 2D/TIME SERIES - WSI

only!)

IKOSA AI (deployed apps):

IKOSA AI Semantic Segmentation (4.2.0, 4.3.0, 4.4.0 -

Status

colour	Blue
title	8-bit

only!, >= 4.5.0)

IKOSA AI Instance Segmentation 2D (>=1.0.0)

IKOSA AI Instance Segmentation Multichannel (>= 1.0.0 -

Status

colour	Blue
title	Multichannel (8/16-bit)

only!)

IKOSA AI (algorithm training):

IKOSA AI Semantic Segmentation (

Status

colour	Blue
title	2D (8-bit)

only!)

IKOSA AI Instance Segmentation 2D (

Status

colour	Blue
title	2D (8/16-bit)

only!)

IKOSA AI Instance Segmentation Multichannel (

Status

colour	Blue
title	Multichannel (8/16-bit)

only!)

Mirax MRXS

mrxs

image/x.mirax.mrxs+pyramid

not supported by IKOSA Portal yet.

Applications:

Axon Quantification (>=3.0.0)

CAM Assay (>=3.2.0 -

Status

colour	Blue
title	8-bit

only!)

Confluence Assay (>=1.1.0 -

Status

colour	Blue
title	8-bit

only!)

Ki-67 Breast Quantification (>= 4.0.0 -

Status

colour	Blue
title	2D (8-bit)

only!)

Network Formation Assay (>=2.2.0 -

Status

colour	Blue
title	8-bit

only!)

Neuronal Network Morphology (>=1.0.0 -

Status

colour	Blue
title	8-bit

only!) (not a publicly available app)

Spheroid Sprouting Assay (>=2.2.0 -

Status

colour	Blue
title	8-bit

only!)

Wound Healing (Scratch) Assay (>=2.2.0 -

Status

colour	Blue
title	8-bit

only!)

Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app)

CD31 IHC Vessel Quantification (>=1.0.0)

IKOSA AI (deployed apps):

IKOSA AI Semantic Segmentation (>=4.5.0 -

Status

colour	Blue
title	2D (8-bit)

only!)

IKOSA AI Instance Segmentation 2D (>=1.3.0 -

Status

colour	Blue
title	2D (8-bit)

only!)

IKOSA AI (algorithm training):

IKOSA AI Semantic Segmentation (

Status

colour	Blue
title	2D (8-bit)

only!)

IKOSA AI Instance Segmentation 2D (

Status

colour	Blue
title	2D (8-bit)

only!)

CTL (Cellular Technologies Limited)

ctl

image/tiff

Status

colour	Blue
title	2D - 8-bit

Applications:

Axon Quantification (>=1.0.1)

CAM Assay (>=1.0.0)

CAM Grid Assay (>=1.0.0)

Confluence Assay (>=1.0.0)

Cytosolic & Nuclear Translocation Assay (>=1.0.0)

Fibrin Tube Formation Assay (>=1.0.0)

Fungi Repaint Assay (>=1.0.0)

Ki-67 Breast Quantification (>=1.0.0)

Network Formation Assay (>=1.0.0)

Neuronal Network Morphology (>=1.0.0) (not a publicly available app)

Spheroid Sprouting Assay (>=1.0.0)

TEM Myocardium Assay (>=1.0.0)

Wound Healing (Scratch) Assay (>=1.0.0)

Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app)

CD31 IHC Vessel Quantification (>=1.0.0)

IKOSA AI (deployed apps):

IKOSA AI Semantic Segmentation (>=4.2.0)

IKOSA AI Instance Segmentation 2D (>=1.0.0)

IKOSA AI (algorithm training):

IKOSA AI Semantic Segmentation

IKOSA AI Instance Segmentation 2D

...

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