This table represents all image file formats that can be uploaded and viewed in IKOSA Portal.
Important:
|
Legend - Whole-slide image support (also stated WSI) - standard image, no WSI support, maximum size of 625 Megapixel (e.g. 25,000 x 25,000 Pixel). |
Type | File Extension(s) | Mime-Type | Supported by IKOSA Portal | Supported use (applications and training) | |
---|---|---|---|---|---|
Aperio/Leica SVS (TIFF) | svs, tif |
|
| Applications: Axon Quantification (>=1.0.0) CAM Assay (>=2.0.0) Confluence Assay (>=1.0.0) Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0) Ki-67 Breast Quantification (>=1.0.0) Network Formation Assay (>=2.0.0) Neuronal Network Morphology (>=1.0.0) (not a publicly available app) Spheroid Sprouting Assay (2.0.0, 2.1.0) Wound Healing (Scratch) Assay (>=1.0.0) Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app) CD31 IHC Vessel Quantification (>=1.0.0) IKOSA AI (deployed apps): IKOSA AI Semantic Segmentation (>=4.2.0) IKOSA AI Instance Segmentation 2D (>=1.0.0) IKOSA AI (application training): IKOSA AI Semantic Segmentation IKOSA AI Instance Segmentation 2D | |
Hamamatsu NDPI | ndpi |
|
| Applications: Axon Quantification (>=1.0.0) CAM Assay (>=2.0.0) Confluence Assay (>=1.0.0) Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0) Ki-67 Breast Quantification (>=1.0.0) Network Formation Assay (>=2.0.0) Neuronal Network Morphology (>=1.0.0) (not a publicly available app) Spheroid Sprouting Assay (2.0.0, 2.1.0) Wound Healing (Scratch) Assay (>=1.0.0) Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app) CD31 IHC Vessel Quantification (>=1.0.0) IKOSA AI (deployed apps): IKOSA AI Semantic Segmentation (>=4.2.0) IKOSA AI Instance Segmentation 2D (>=1.0.0) IKOSA AI (application training): IKOSA AI Semantic Segmentation IKOSA AI Instance Segmentation 2D | |
Zeiss CZI | czi |
|
| Applications: Axon Quantification (>=2.1.0 - only!) CAM Assay (>=3.1.0 - only!) Cell Painting (>= 1.0.0 - only!) Confluence Assay (>=1.0.0 - only!; >=2.0.0) Cytosolic & Nuclear Translocation Assay (>=3.1.0 - only!) Ki-67 Breast Quantification (>=3.1.0 - only!) Network Formation Assay (>=2.1.0 - only!) Neuronal Network Morphology (>=1.0.0 - only!) (not a publicly available app) Sparkfinder (>= 1.0.0 - only!) Spheroid Lipid Droplet Profiling (>= 1.0.0 - only!) (not a publicly available app) Spheroid Sprouting Assay (>=2.1.0 - only!) Wound Healing (Scratch) Assay (>=2.1.0 - only!, >= 3.0.0) Ovarian Carcinoma DAB Scoring (>=1.0.0 only!) (not a publicly available app) CD31 IHC Vessel Quantification (>=1.0.0 IKOSA AI (deployed apps): IKOSA AI Semantic Segmentation (>=4.2.0 - only!) IKOSA AI Instance Segmentation 2D (>=1.0.0 - - only!) IKOSA AI Instance Segmentation Multichannel (>= 1.0.0 - only!) IKOSA AI (algorithm training): IKOSA AI Semantic Segmentation ( only!) IKOSA AI Instance Segmentation 2D ( only!) IKOSA AI Instance Segmentation Multichannel ( only!) | |
PreciPoint VMIC | vmic |
|
| Applications: Axon Quantification (>=1.0.0) CAM Assay (>=2.0.0) Confluence Assay (>=1.0.0) Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0) Ki-67 Breast Quantification (>=1.0.0) Network Formation Assay (>=2.0.0) Neuronal Network Morphology (>=1.0.0) (not a publicly available app) Spheroid Sprouting Assay (2.0.0, 2.1.0) Wound Healing (Scratch) Assay (>=1.0.0) Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app) CD31 IHC Vessel Quantification (>=1.0.0) IKOSA AI (deployed apps): IKOSA AI Semantic Segmentation (>=4.2.0) IKOSA AI Instance Segmentation 2D (>=1.0.0) IKOSA AI (application training): IKOSA AI Semantic Segmentation IKOSA AI Instance Segmentation 2D | |
PreciPoint GTIF | gtif |
|
| Applications: Axon Quantification (>=1.0.0) CAM Assay (>=2.0.0) Confluence Assay (>=1.0.0) Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0) Ki-67 Breast Quantification (>=1.0.0) Network Formation Assay (>=2.0.0) Neuronal Network Morphology (>=1.0.0) (not a publicly available app) Spheroid Sprouting Assay (2.0.0, 2.1.0) Wound Healing (Scratch) Assay (>=1.0.0) Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app) CD31 IHC Vessel Quantification (>=1.0.0) IKOSA AI (deployed apps): IKOSA AI Semantic Segmentation (>=4.2.0) IKOSA AI Instance Segmentation 2D (>=1.0.0) IKOSA AI (application training): IKOSA AI Semantic Segmentation IKOSA AI Instance Segmentation 2D | |
Generic Tiled TIFF | tif, tiff |
|
| Applications: Axon Quantification (>=1.0.0) CAM Assay (>=2.0.0) Confluence Assay (>=1.0.0) Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0) Ki-67 Breast Quantification (>=1.0.0) Network Formation Assay (>=2.0.0) Neuronal Network Morphology (>=1.0.0) (not a publicly available app) Spheroid Sprouting Assay (2.0.0, 2.1.0) Wound Healing (Scratch) Assay (>=1.0.0) Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app) CD31 IHC Vessel Quantification (>=1.0.0) IKOSA AI (deployed apps): IKOSA AI Semantic Segmentation (>=4.2.0) IKOSA AI Instance Segmentation 2D (>=1.0.0) IKOSA AI (application training): IKOSA AI Semantic Segmentation IKOSA AI Instance Segmentation 2D | |
Huron Digital Pathology TIFF | tif, tiff |
|
| Applications: Axon Quantification (>=1.0.0) CAM Assay (>=2.0.0) Confluence Assay (>=1.0.0) Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0) Ki-67 Breast Quantification (>=1.0.0) Network Formation Assay (>=2.0.0) Neuronal Network Morphology (>=1.0.0) (not a publicly available app) Spheroid Sprouting Assay (2.0.0, 2.1.0) Wound Healing (Scratch) Assay (>=1.0.0) Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app) CD31 IHC Vessel Quantification (>=1.0.0) IKOSA AI (deployed apps): IKOSA AI Semantic Segmentation (>=4.2.0) IKOSA AI Instance Segmentation 2D (>=1.0.0) IKOSA AI (application training): IKOSA AI Semantic Segmentation IKOSA AI Instance Segmentation 2D | |
Philips Healthcare TIFF | tif, tiff |
|
| Applications: Axon Quantification (>=1.0.0) CAM Assay (>=2.0.0) Confluence Assay (>=1.0.0) Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0) Ki-67 Breast Quantification (>=1.0.0) Network Formation Assay (>=2.0.0) Neuronal Network Morphology (>=1.0.0) (not a publicly available app) Spheroid Sprouting Assay (2.0.0, 2.1.0) Wound Healing (Scratch) Assay (>=1.0.0) Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app) CD31 IHC Vessel Quantification (>=1.0.0) IKOSA AI (deployed apps): IKOSA AI Semantic Segmentation (>=4.2.0) IKOSA AI Instance Segmentation 2D (>=1.0.0) IKOSA AI (application training): IKOSA AI Semantic Segmentation IKOSA AI Instance Segmentation 2D | |
Roche / Ventana TIFF | tif, tiff
|
|
| Applications: Axon Quantification (>=1.0.0) CAM Assay (>=2.0.0) Confluence Assay (>=1.0.0) Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0) Ki-67 Breast Quantification (>=1.0.0) Network Formation Assay (>=2.0.0) Neuronal Network Morphology (>=1.0.0) (not a publicly available app) Spheroid Sprouting Assay (2.0.0, 2.1.0) Wound Healing (Scratch) Assay (>=1.0.0) Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app) CD31 IHC Vessel Quantification (>=1.0.0) IKOSA AI (deployed apps): IKOSA AI Semantic Segmentation (>=4.2.0) IKOSA AI Instance Segmentation 2D (>=1.0.0) IKOSA AI (application training): IKOSA AI Semantic Segmentation IKOSA AI Instance Segmentation 2D | |
Leica SCN (Brightfield) | scn |
|
| Applications: Axon Quantification (>=1.0.0) CAM Assay (>=2.0.0) Confluence Assay (>=1.0.0) Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0) Ki-67 Breast Quantification (>=1.0.0) Network Formation Assay (>=2.0.0) Neuronal Network Morphology (>=1.0.0) (not a publicly available app) Spheroid Sprouting Assay (2.0.0, 2.1.0) Wound Healing (Scratch) Assay (>=1.0.0) Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app) CD31 IHC Vessel Quantification (>=1.0.0) IKOSA AI (deployed apps): IKOSA AI Semantic Segmentation (>=4.2.0) IKOSA AI Instance Segmentation 2D (>=1.0.0) IKOSA AI (application training): IKOSA AI Semantic Segmentation IKOSA AI Instance Segmentation 2D | |
PerkinElmer QPTIFF | qptiff |
|
| Applications: Axon Quantification (>=1.0.0 - only!) CAM Assay (>=2.0.0 - only!; >=3.2.0 - only!) Cell Painting (>= 1.0.0 - only!) Confluence Assay (1.0.0 - only! >=1.1.0 - only!; >=2.0.0) Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0 - only!) Ki-67 Breast Quantification (>=1.0.0 - only!) Network Formation Assay (>=2.0.0 - only!; >=2.2.0 - only!) Neuronal Network Morphology (>=1.0.0 - only!) (not a publicly available app) Sparkfinder (>= 1.2.0 - only!) Spheroid Lipid Droplet Profiling (>= 1.0.0 - only!) (not a publicly available app) Spheroid Sprouting Assay (2.0.0, 2.1.0 - only!; >=2.2.0 - only!) Wound Healing (Scratch) Assay (>=1.0.0 - only!; >=2.2.0 - only!; >=3.0.0) Ovarian Carcinoma DAB Scoring (>=1.0.0 only!) (not a publicly available app) CD31 IHC Vessel Quantification (>=1.0.0 only!) IKOSA AI (deployed apps): IKOSA AI Semantic Segmentation (>=4.2.0 - only!; >=5.1.0) IKOSA AI Instance Segmentation 2D (>=1.0.0 - only!; >=2.1.0) IKOSA AI Instance Segmentation Multichannel (>= 2.1.0 - only!) IKOSA AI (application training): IKOSA AI Semantic Segmentation ( only!) IKOSA AI Instance Segmentation 2D ( only!) KOSA AI Instance Segmentation Multichannel ( only!) | |
JPEG file (JFIF encoded) | jpg, jpeg |
|
| Applications: Axon Quantification (>=1.0.1) CAM Assay (>=1.0.0) CAM Grid Assay (1.0.0, 1.1.0) Confluence Assay (>=1.0.0) Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0) Fibrin Tube Formation Assay (1.0.0, 1.0.2) Fungi Repaint Assay (1.0.0, 2.0.0) Ki-67 Breast Quantification (>=1.0.0) Network Formation Assay (>=1.0.0) Neuronal Network Morphology (>=1.0.0) (not a publicly available app) Spheroid Sprouting Assay (1.0.0, 2.0.0, 2.1.0) TEM Myocardium Assay (1.0.0) Wound Healing (Scratch) Assay (>=1.0.0) Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app) CD31 IHC Vessel Quantification (>=1.0.0) IKOSA AI (deployed apps): IKOSA AI Semantic Segmentation (>=4.2.0) IKOSA AI Instance Segmentation 2D (>=1.0.0) IKOSA AI (application training): IKOSA AI Semantic Segmentation IKOSA AI Instance Segmentation 2D | |
PNG | png |
|
| Applications: Axon Quantification (>=1.0.1) CAM Assay (>=1.0.0) CAM Grid Assay (1.0.0, 1.1.0) Confluence Assay (>=1.0.0) Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0) Fibrin Tube Formation Assay (1.0.0, 1.0.2) Fungi Repaint Assay (1.0.0, 2.0.0) Ki-67 Breast Quantification (>=1.0.0) Network Formation Assay (>=1.0.0) Neuronal Network Morphology (>=1.0.0) (not a publicly available app) Spheroid Sprouting Assay (1.0.0, 2.0.0, 2.1.0) TEM Myocardium Assay (1.0.0) Wound Healing (Scratch) Assay (>=1.0.0) Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app) CD31 IHC Vessel Quantification (>=1.0.0) IKOSA AI (deployed apps): IKOSA AI Semantic Segmentation (>=4.2.0) IKOSA AI Instance Segmentation 2D (>=1.0.0) IKOSA AI (application training): IKOSA AI Semantic Segmentation IKOSA AI Instance Segmentation 2D | |
BMP | bmp |
|
| Applications: Axon Quantification (>=1.0.1) CAM Assay (>=1.0.0) CAM Grid Assay (1.0.0, 1.1.0) Confluence Assay (>=1.0.0) Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0) Fibrin Tube Formation Assay (1.0.0, 1.0.2) Fungi Repaint Assay (1.0.0, 2.0.0) Ki-67 Breast Quantification (>=1.0.0) Network Formation Assay (>=1.0.0) Neuronal Network Morphology (>=1.0.0) (not a publicly available app) Spheroid Sprouting Assay (1.0.0, 2.0.0, 2.1.0) TEM Myocardium Assay (1.0.0) Wound Healing (Scratch) Assay (>=1.0.0) Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app) CD31 IHC Vessel Quantification (>=1.0.0) IKOSA AI (deployed apps): IKOSA AI Semantic Segmentation (>=4.2.0) IKOSA AI Instance Segmentation 2D (>=1.0.0) IKOSA AI (application training): IKOSA AI Semantic Segmentation IKOSA AI Instance Segmentation 2D | |
TIFF | tif, tiff |
|
| Applications: Axon Quantification (>=1.0.1 - only!) CAM Assay (>=1.0.0 - only!) CAM Grid Assay (1.0.0 and 1.1.0 - only!) Confluence Assay (>=1.0.0 - only!; >=2.0.0) Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0) Fibrin Tube Formation Assay (1.0.0, 1.0.2 - only!) Fungi Repaint Assay (1.0.0, 2.0.0 - only!) Ki-67 Breast Quantification (>=1.0.0 - only!) Network Formation Assay (>=1.0.0 - only!) Neuronal Network Morphology (>=1.0.0 - only!) (not a publicly available app) Spheroid Sprouting Assay (1.0.0, 2.0.0, 2.1.0 - only!) TEM Myocardium Assay (1.0.0) Wound Healing (Scratch) Assay (>=1.0.0 - only!; >=3.0.0) Ovarian Carcinoma DAB Scoring (>=1.0.0 - only!) (not a publicly available app) CD31 IHC Vessel Quantification (>=1.0.0 - only!) IKOSA AI (deployed apps): IKOSA AI Semantic Segmentation (4.2.0, 4.3.0, 4.4.0 - only!, >= 4.5.0) IKOSA AI Instance Segmentation 2D (>=1.0.0) IKOSA AI (algorithm training): IKOSA AI Semantic Segmentation ( only!) IKOSA AI Instance Segmentation 2D | |
Multipage TIFF | tif, tiff |
|
| Applications: CAM Assay (>=2.0.0 - only!) Cell Painting (>=1.0.0 - only!) Confluence Assay (>=1.0.0 - only!; >=2.0.0) Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0 - only!) Network Formation Assay (>=2.0.0 only!) Neuronal Network Morphology (>=1.0.0 - only!) (not a publicly available app) Sparkfinder (>=1.0.0 - only!) Spheroid Lipid Droplet Profiling (>=1.0.0 - only!) (not a publicly available app) Spheroid Sprouting Assay (2.0.0, 2.1.0 - only!) Wound Healing (Scratch) Assay (>=1.0.0 - only!; >=3.0.0) Ovarian Carcinoma DAB Scoring (>=1.0.0 only!) (not a publicly available app) CD31 IHC Vessel Quantification (>=1.0.0 only!) IKOSA AI (deployed apps): IKOSA AI Semantic Segmentation (4.2.0, 4.3.0, 4.4.0 - only!, >= 4.5.0) IKOSA AI Instance Segmentation 2D (>=1.0.0) IKOSA AI Instance Segmentation Multichannel (>=1.0.0 - only!) IKOSA AI (algorithm training): IKOSA AI Instance Segmentation Multichannel ( only!) | |
OME TIFF | ome.tif, ome.tiff, |
|
| Applications: Axon Quantification (>=2.1.0 - only!) CAM Assay (>=3.1.0 - only!) Cell Painting (>= 1.0.0 - only!) Confluence Assay (>=1.0.0 - only!; >=2.0.0) Cytosolic & Nuclear Translocation Assay (>=3.1.0 - only!) Ki-67 Breast Quantification (>=3.1.0 - only!) Network Formation Assay (>=2.1.0 - only!) Neuronal Network Morphology (>=1.0.0 - only!) (not a publicly available app) Sparkfinder (>= 1.0.0 - only!) Spheroid Lipid Droplet Profiling (>=1.0.0 - only!) (not a publicly available app) Spheroid Sprouting Assay (>=2.1.0 - only!) Wound Healing (Scratch) Assay (>=2.1.0 - only!; >=3.0.0) Ovarian Carcinoma DAB Scoring (>=1.0.0 only!) (not a publicly available app) CD31 IHC Vessel Quantification (>=1.0.0 only!) IKOSA AI (deployed apps): IKOSA AI Semantic Segmentation (>=4.2.0 - only!) IKOSA AI Instance Segmentation 2D (>=1.0.0) IKOSA AI Instance Segmentation Multichannel (>= 1.0.0) IKOSA AI (algorithm training): IKOSA AI Semantic Segmentation ( only!) IKOSA AI Instance Segmentation 2D ( only!) IKOSA AI Instance Segmentation Multichannel ( only!) | |
Molecular Devices Stack STK | stk |
| Applications: Axon Quantification (>=1.0.1 - only!) CAM Assay (1.0.0 - only, >=2.0.0 - only!) CAM Grid Assay (1.0.0 and 1.1.0 - only!) Cell Painting (>=1.0.0 - only!) Confluence Assay (>=1.0.0 - only!; >=2.0.0) Cytosolic & Nuclear Translocation Assay (1.0.0, 2.0.0, 3.0.0, 3.1.0 - only!) Fibrin Tube Formation Assay (1.0.0, 1.0.2 - only!) Fungi Repaint Assay (1.0.0 and 2.0.0 - only!) Ki-67 Breast Quantification (>=1.0.0 - only!) Network Formation Assay (1.0.0 - only!, >=2.0.0 - only!) Neuronal Network Morphology (>=1.0.0 - only) (not a publicly available app) Sparkfinder (>=1.0.0 - only!) Spheroid Lipid Droplet Profiling (>=1.0.0 - only!) (not a publicly available app) Spheroid Sprouting Assay (1.0.0 - only, 2.0.0, 2.1.0) TEM Myocardium Assay (1.0.0 - only!) Wound Healing (Scratch) Assay (>=1.0.0 - only!; >=3.0.0) Ovarian Carcinoma DAB Scoring (>=1.0.0 only!) (not a publicly available app) CD31 IHC Vessel Quantification (>=1.0.0 only!) IKOSA AI (deployed apps): IKOSA AI Semantic Segmentation (4.2.0, 4.3.0, 4.4.0 - only!, >= 4.5.0) IKOSA AI Instance Segmentation 2D (>=1.0.0) IKOSA AI Instance Segmentation Multichannel (>= 1.0.0 - only!) IKOSA AI (algorithm training): IKOSA AI Semantic Segmentation ( only!) IKOSA AI Instance Segmentation 2D ( only!) IKOSA AI Instance Segmentation Multichannel ( only!) | ||
Mirax MRXS | mrxs |
| not supported by IKOSA Portal yet. | Applications: Axon Quantification (>=3.0.0) CAM Assay (>=3.2.0 - only!) Confluence Assay (>=1.1.0 - only!) Ki-67 Breast Quantification (>= 4.0.0 - only!) Network Formation Assay (>=2.2.0 - only!) Neuronal Network Morphology (>=1.0.0 - only!) (not a publicly available app) Spheroid Sprouting Assay (>=2.2.0 - only!) Wound Healing (Scratch) Assay (>=2.2.0 - only!) Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app) CD31 IHC Vessel Quantification (>=1.0.0) IKOSA AI (deployed apps): IKOSA AI Semantic Segmentation (>=4.5.0 - only!) IKOSA AI Instance Segmentation 2D (>=1.3.0 - only!) IKOSA AI (algorithm training): IKOSA AI Semantic Segmentation ( only!) IKOSA AI Instance Segmentation 2D ( only!) | |
CTL (Cellular Technologies Limited) | ctl |
|
| Applications: Axon Quantification (>=1.0.1) CAM Assay (>=1.0.0) CAM Grid Assay (>=1.0.0) Confluence Assay (>=1.0.0) Cytosolic & Nuclear Translocation Assay (>=1.0.0) Fibrin Tube Formation Assay (>=1.0.0) Fungi Repaint Assay (>=1.0.0) Ki-67 Breast Quantification (>=1.0.0) Network Formation Assay (>=1.0.0) Neuronal Network Morphology (>=1.0.0) (not a publicly available app) Spheroid Sprouting Assay (>=1.0.0) TEM Myocardium Assay (>=1.0.0) Wound Healing (Scratch) Assay (>=1.0.0) Ovarian Carcinoma DAB Scoring (>=1.0.0) (not a publicly available app) CD31 IHC Vessel Quantification (>=1.0.0) IKOSA AI (deployed apps): IKOSA AI Semantic Segmentation (>=4.2.0) IKOSA AI Instance Segmentation 2D (>=1.0.0) IKOSA AI (algorithm training): IKOSA AI Semantic Segmentation IKOSA AI Instance Segmentation 2D |